If you have a default domain already configured with NGINX, the easiest way to renew manually a domain is to temporarily disable your custom domain and then use certbot-auto renew the certificate.
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| DOMAIN=www.yourdomain.com | |
| sudo rm /etc/nginx/sites-enabled/$DOMAIN | |
| sudo service nginx reload | |
| sudo certbot-auto certonly -a webroot --webroot-path=/usr/share/nginx/html -d $DOMAIN | |
| sudo ln -s /etc/nginx/sites-available/$DOMAIN /etc/nginx/sites-enabled/$DOMAIN | |
| sudo service nginx reload |